Month: May 2024

RIKEN Symposium Call for registration

We are delighted to announce to host RIKEN Symposium Challenges in Bioimaging: beyond the scales and beyond the borders together with Laboratory for Comprehensive Bioimaging, RIKEN BDR.

  • Date: June 26, Wednesday, 2024
  • Place: Kobe
  • Venue: Kobe: DB Bldg. Auditorium C1F
  • Organizers: Shuichi Onami and Tomonobu Watanabe
  • URL: http://bioimaging.riken.jp/sympo/20240626/
  • Advance registration is required for participation.
  • Fees
    • Participation: free
    • Mixer: JPY 4,000-
    • Lunch box (prepared on request): JPY 1,000-
  • Due dates
    • Talk session: 25th June
    • Mixer: 10th June
    • Lunch box request: 10th June
  • Contact: Symposium Office rikensymposium[at]ml.riken.jp
Poster RIKEN Symposium Challenges in Bioimaging: beyond the scales and beyond the borders. Date June 26th, 2024 Venue Auditorium, Developmental Biology Building “C” 1st floor, Riken BDR (Kobe Campus West Area) Speakers Oluwaseun F. Gakenou (Stellenbosch University, South Africa) Tokuko Haraguchi (Osaka University, Japan) Ioanna Mela (University of Cambridge, UK) Josh Moore (German BioImaging, Germany) Shuichi Onami (RIKEN BDR, Japan) Shotaro Otsuka (Max Perutz Labs, Austria) Timothy Stasevich (Colorado State University, USA) Caterina Strambio-De-Castillia (The University of Massachusetts Medical School, USA) Tomonobu Watanabe (RIKEN BDR, Japan)Guan-Yu Zhuo (China Medical University, Taiwan)

New Paper is Out

Dr. Yamagata (R-IH Life Science Data Sharing Unit) et al. published a paper in BMC Medical Informatics and Decision Making on the development of an otology related to COVID-19 infectious processes.

Reference

Yamagata, Y., Kushida, T., Onami, S. et al. Homeostasis imbalance process ontology: a study on COVID-19 infectious processes. BMC Med Inform Decis Mak 23 (Suppl 4), 301 (2024). doi: 10.1186/s12911-024-02516-0

New Paper is Out

A paper by Dr. Yuki Yamagata (R-IH Life Science Data Sharing Unit, former researcher at Onami Lab ) et al. on the ontological model that organizes knowledge of cellular senescence was published in Scientific Data.

Reference

Yamagata, Y., Fukuyama, T., Onami, S. et al. Prototyping an Ontological Framework for Cellular Senescence Mechanisms: A Homeostasis Imbalance Perspective. Sci Data 11, 485 (2024). https://doi.org/10.1038/s41597-024-03331-y

Protocol published

Dr Chentao Wen published a protocol in Methods in Molecular Biology. He details the challenges of cell tracking within deforming organs and moving animals and explains how to use the latest version of 3DeeCellTracker to accurately track cells, thereby enhancing our understanding of various organ dynamics and biological processes.

Reference

Wen, C. (2024). Deep Learning-Based Cell Tracking in Deforming Organs and Moving Animals. In: Wuelfing, C., Murphy, R.F. (eds) Imaging Cell Signaling. Methods in Molecular Biology, vol 2800. Humana, New York, NY. doi: 10.1007/978-1-0716-3834-7_14