Category: Uncategorized

New paper is out.

A paper by Drs Koji Kyoda and Shuichi Onami as co-authors has been published.

Reference

Moore, J., Basurto-Lozada, D., Besson, S. et al. OME-Zarr: a cloud-optimized bioimaging file format with international community support. Histochem Cell Biol (2023).

doi: 10.1007/s00418-023-02209-1

Summer internship

We welcomed Junbo Xia from Shanghai Jiao Tong University as an intern this summer.

He is working on a project, Development of deep learning program to identify cells from bioimaging data.

Good luck!

New paper is out.

A paper written by Drs Soya Shinkai and Shuichi Onami as co-authors has been published.

Reference


Hara, M., Ariyoshi, M., Sano, T., Nozawa, R., Shinkai, S., Onami, S., Jansen, I., Hirota, T., Fukagawa, T.: Centromere/kinetochore is assembled through CENP-C oligomerization. Mol. Cell 83. (2023).

doi:10.1016/j.molcel.2023.05.023

New Paper by Dr Chentao Wen

Our SPDR, Dr Chentao Wen published a new paper on “Seg2Link” in Scientific Reports.

Nagoya City University, his former affiliation, issued a press release on his research: Seg2Link: an efficient and versatile solution for semi-automatic cell segmentation in 3D image
stacks (May 22, 2023. In Japanese Only.)

Reference

Wen, C., Matsumoto, M., Sawada, M. et al. Seg2Link: an efficient and versatile solution for semi-automatic cell segmentation in 3D image stacks. Sci Rep 13, 7109 (2023). https://doi.org/10.1038/s41598-023-34232-6

[Press Release]Euchromatin forms condensed chromatin domain.

Tadasu Nozaki (Former Graduate Student at NIG)and Prof. Kazuhiro Maeshima (NIG) et. al. together with Drs Soya Shinkai and Shuichi Onami  have found euchromatin forms condensed chromatin domains. This finding suggests an innovative model that condensed structure is the default state of chromatin.

Learn more about the study on Press Release from the National Institute of Genetics.

Reference

Nozaki, T., Shinkai, S., Ide, S., Higashi, K., Tamura, S., Shimazoe, M. A., Nakagawa, M., Suzuki, Y., Okada, Y., Sasai, M., Onami, S., Kurokawa, K., Iida, S., Maeshima, K. (2023). Condensed but liquid-like domain organization of active chromatin regions in living human cells. Sci. Adv. 9, eadf1488.

https://doi.org/10.1126/sciadv.adf1488

New Paper by Yusuke Azuma

Check out our new paper by Dr Yusuke Azuma et al., published in Frontiers in Bioinformatics.