Dr Ko Sugawra has released QuPath extension for Segment Anything Model (SAM) v0.3.
Lean about more, please visit Ko’s annoucement on Image-sc, a scientific image community forum.
Category: General
SSBD in Experimental Medicine.
A contribution by Drs Kyoda and Onami on the current status and prospects on bioimaging database has been published in a magazine, Experimental Medicine.
＼新刊発行のご案内／
本日「実験医学別冊 空間オミクス解析スタートアップ実践ガイド」が取次さま搬入となりました。
がん・脳神経・発生などの研究分野で大注目の最先端解析技術を詳説しています！
空間オミクス解析の本邦初の実験書です。https://t.co/Hl9D8AqMYN pic.twitter.com/LSeGLH9Cu5— 羊土社 営業部 (@Yodosha_eigyo) December 5, 2022
We’re hiring!
We are currently seeking a part-time admin staff for the SSBD database team. If you are interested, please get in touch with us.
Other positions, such as research scientists, are also open.
Please visit job opportunities to get more details.
We look forward to you joining our laboratory!
SSBD in AMATERAS promotion
SANKEN, Osaka University released a promotional video of the trans-scale-scope AMATERAS. Our collaborative research with the SSBD is also introduced in the video. (At around 3:00)
AJACS12 Registration is Open
Our team leader Dr Shuichi Onami is giving a lecture titled “BioImaging database” at the AJACS online 12 on August 25, hosted by JST-NBDC.
This workshop is aimed to educate how to use databases and tools in life sciences as well as introduce activities for databases integration.
AJACS online 12
- Date and Time: August 25, 2022 13:30~15:50
- Venue: Online
- Meeting URL will be announced to participants.
- Fees: Free
- Host: Japan Science and Technology Agency (JST)
- Registration required at the workshop website.
For more details, please go to the AJCS online 12 website (in Japanese only):
パスウェイ＆画像データベースを知って・学んで・使う（AJACSオンライン12）
We look forward you to joining the workshop!
We’re hiring.
We are currently hiring scientists. Please visit job opportunities to get more details.
If you are interested, please contact Dr Onami.
We look forward you to joining our laboratory!
Dr Onami in RIKEN NEWS
Our TL Dr Onami and his research on data sharing in life sciences were featured in RIKEN NEWS which covers researchers at the forefront of their research fields.
You can read the article on RIKEN’s website. (Only in Japanese.)
[Event] JST CREST “BioDX” Kickoff Symposium
JST and RIKEN BDR host an online symposium “JST CREST “BioDX” Kickoff Symposium” on November 21 – 22. This symposium provides presentation and discussion on the current status and future prospects of bio- DX from researchers working at the forefront.
For more information, visit the symposium website.
The symposium will only be in Japanese.
Seeking Data Annotator
We are currently looking for a data annotator as either a full time or part-time worker.
This position’s main role is data annotation in SSBD, such as selecting data from papers in life science research, extracting their metadata, requesting other laboratories inside/ outside the RIKEN to provide their research data, and registering them into SSBD.
The successful candidate must be able to understand papers in English as well as have excellent writing skills in Japanese.
Job Descriptions are posted on the RIKEN’s official website. (In Japanese only)
Technical Staff: テクニカルスタッフ募集（DD2101）
Research Part-timer: 研究パートタイマー募集（DD2102）
If you are interested in the position, please contact Dr Onami in advance of your application.
We look forward to your application!
Improvement in image quality via the pseudo confocal effect in multidirectional digital scanned laser light-sheet microscopy
Our TL Onami and DR Kaneshiro (Laboratory for Comprehensive Bioimaging, RIKEN BDR) et al. proposed a new pseudo confocal system that combines multiline scanning for light-sheet illumination combined and simple image construction. By further combining our method with multidirectional digital scanned laser light-sheet microscopy (mDSLM), we demonstrated improvement of image quality in biological samples.