Laboratory for Developmental Dynamics, RIKEN BDR
Check out our new paper by Dr Yusuke Azuma et al., published in Frontiers in Bioinformatics.
Yusuke Azuma et al.’s new paper is out. We quantified 4D cell morphodynamics in >50 C. elegans embryos from the two-cell stage to mid-gastrulation using image processing and systematically analyzed the morphodynamics features in the single-cell resolution. https://t.co/UNXYiLj34Q
— Shuichi Onami (@sonamix) March 23, 2023
Onami Lab is going to join a BDR affiliated graduate school programs virtual open lab program on April 8.
This is a great opportunity to learn how your students life will be at RIKEN and you can expand your career as a scientist.
If you are interested in the event, please visit at the website for BDR joint graduate school laboratory tour (in Japanese only).
Dr Onami’s talk about the global sharing of bioimaging data at MBSJ2022 is now available for the public.
Check it up at multimedia.
Posters and lightning talks from Onami lab at the Symposium of Database Togo (Integration) 2022 hosted by JST- NBDC are now open for public.
Dr Onami’s talk on the establishment of a global data sharing system for bio-imaging data will be available soon.
Please check out multimedia or the Symposium of Database Togo (Integration) 2022 website.
Drs. Soya Shinkai and Shuichi Onami together with Shiori Iida (SOKENDAl) and Prof. Kazuhiro Maeshima (NIG) et. al. have investigated the local movements of chromatin in living human cells using super-resolution fluorescence microscopy.
Learn more about the study on Press Release from the National Institute of Genetics.
Iida S., Shinkai, S., Itoh, Y., Tamura, S., Kanemaki, M. T., Onami, S., Maeshima, K. (2022). Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells. Sci. Adv. 8, eabn5626.
https://doi.org/10.1126/sciadv.abn5626
SSBD was featured in the Singularity Biology News Letter No.4.
シンギュラリティ生物学 ニュースレターVol. 4発行しました！特集記事：「トランススケールスコープAMATERAS開発ストーリー」「生命動態データを保存、共有するデータベースSSBD」が見どころです。#シンギュラリティ生物学#Singularitybiology#AMATERAShttps://t.co/A8YqcIq9eY
— Singularity Biology (@SingularityBio1) May 31, 2022
A contribution by Dr Onami, “Development of data format standards and data sharing systems for bioimaging” has been published in a magazine, Experimental Medicine.
Dr Momoko Imakubo et al.’s study on analysis of genes involved in reproductive aging in C. elegans oocytes by using an image database of RNAi embryos and image processing has been published online at https://doi.org/10.17706/ijbbb.2021.11.3.40-49.
Congratulations to our former student trainee Momoko Imakubo who earned her PhD from Kobe University in March 2021 on her achievement. We wish you all the best in your future endeavour!
A new paper by Momoko Imakubo, Student Trainee in the Onami lab, was published in the BMC Bioinformatics.
In this paper, we quantified age-associated changes in oocyte appearance in the nematode Caenorhabditis elegans by statistical image processing. We showed that the oocyte cytoplasmic texture in Nomarski differential interference contrast images significantly changes with aging.
Dr. Yuki Yamagata, Research Scientist in the Onami lab, co-authored a review paper with Dr. Hiroshi Masuya, RIKEN BRC, et al. The paper was published in the January issue of Laboratory Animal Research.
The RIKEN BioResource Research Center released an integrated database of bioresources including, experimental mouse strains, Arabidopsis thaliana as a laboratory plant, cell lines, microorganisms, and genetic materials using Resource Description Framework-related technologies in 2020. This review summarizes the features of current version of databases related to mouse strain resources in RIKEN BioResource Research Center and discusses future views.